Hey Andy,
Thanks for starting this discussion!
One thing this brings up is the never-resolved issue of whether BIPs should document how we'd like things to work, or how things actually do work. BIP32 is an example of the former - it was new technology and the spec was finalised before any wallets actually implemented it. BIP 44 is an example of the latter, it basically documents how myTREZOR works and as such there was minimal or no scope for changes to it. Of course both kinds of document are valuable.
Currently these specs document how Andreas' app already works. Whilst preserving compatibility with existing Android apps is surely useful, having a well designed protocol is also good. The current protocol has several problems. I don't know which is more important right now and don't have a strong opinion on that. My gut feeling is that these documents should possibly be just wiki pages on Andreas' github. Then if the protocol is brought to a point where it seems pretty good, maybe it can be BIPped at that point. Alternatively, if developers of other wallet apps feel they'd like a BIP right now even in the current state, that would be a very important data point.
Re: the actual specs: